VAT advisory services

Ensuring you comply with regulations and helping you manage your VAT

Specialist VAT advisory for growing businesses

VAT is rarely a routine compliance task once a business starts to grow. It affects cash flow, pricing, deal structures, and the cost of every transaction. It also carries a level of HMRC scrutiny that few other taxes match, and errors are usually expensive by the time they are found.

Our VAT specialists work with businesses that have moved beyond straightforward quarterly returns. That includes businesses expanding into new markets, buying or selling companies, restructuring group entities, trading across borders, and dealing in property.

VAT issues most commonly arise when something changes. Typical triggers include:

  • Business expansion: where new products, new revenue streams, or new locations change the VAT liability of what you supply.
  • Acquisitions: where VAT grouping, transfer of a going concern (TOGC) treatment, and historic VAT exposure all need review before completion.
  • Restructuring: where moving trade, assets, or property between entities can create unexpected VAT charges.
  • International trade: where import VAT, place of supply, and overseas registration obligations apply.
  • Property transactions: where the option to tax, the capital goods scheme, and construction VAT rates determine whether VAT is recoverable.

We focus on four elements:

  1. VAT efficiency, so you are not absorbing VAT you could recover.
  2. Compliance risk, so errors are found before HMRC finds them.
  3. Transaction support, so VAT does not derail a deal timetable.
  4. Operational VAT, so your systems and processes produce accurate returns without consuming finance team capacity.

Where the position is unclear, we set out the options, the risk attached to each, and the approach we would recommend.

VAT compliance and Making Tax Digital (MTD)

Every VAT registered business has ongoing obligations, and the operational burden is heavier than most finance teams expect. Registration thresholds, return deadlines, record keeping, and digital links all need to be managed correctly.

Under Making Tax Digital for VAT, VAT registered businesses must keep digital records and file returns using compatible software. Manual copy and paste between systems is not permitted. The digital link requirement is where most businesses fall short, particularly where data passes through spreadsheets, bridging tools, or multiple systems before reaching the return.

Core operational VAT obligations include:

  • Maintaining digital VAT records for the required retention period.
  • Filing returns through MTD compatible software.
  • Preserving digital links across every stage of the return process.
  • Applying the correct VAT liability to each supply, including reduced rate, zero rate, and exempt items.
  • Operating partial exemption calculations where you make both taxable and exempt supplies.
  • Managing the capital goods scheme where applicable.
  • Correcting errors within the permitted adjustment limits, or disclosing them separately where they exceed those limits.

The VAT registration threshold is £90,000 of taxable turnover in any rolling 12-month period, measured on a rolling basis rather than by tax year. Registration must be notified to HMRC within 30 days of the end of the month in which the threshold is crossed. The deregistration threshold is £88,000. Both figures have been unchanged since 1 April 2024.

Two ways we support VAT compliance

Our VAT specialists work with businesses either way round:

  • We prepare it: We complete your VAT return and you approve it before submission.
  • You prepare it, we check it: You run the process and closedown yourself, and we review it before it goes to HMRC. This is worth having even when the return looks straightforward: HMRC is particularly active on VAT accuracy at the moment, and a second review catches errors before they become a disclosure.

We are sector agnostic and work within whatever system you already use. If you are not MTD compliant and need a bridging tool to link your existing spreadsheets to HMRC’s systems, we can supply one, with or without a review of the figures behind it.

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VAT disputes, investigations and HMRC enquiries

HMRC treats VAT as a priority area for compliance activity. Enquiries often begin with a routine information request and escalate quickly if the response is incomplete or inconsistent with previous filings.

We support businesses at every stage, from the first HMRC letter through to tribunal. Our work covers:

  • HMRC VAT enquiries: including managing correspondence, information requests, and visits.
  • VAT investigations: where HMRC suspects a systematic error or deliberate understatement.
  • Assessments and penalties: including reviewing the basis of an assessment and challenging penalty positions where behaviour has been misclassified.
  • Voluntary disclosures: which usually reduce penalty exposure significantly when made before HMRC opens an enquiry.
  • Tribunal support: working alongside legal advisers where a case proceeds to the First-tier Tribunal.
  • Alternative dispute resolution: which can resolve factual disagreements without litigation.
  • Risk reviews: to establish your exposure before HMRC does.

The most common mistake is responding to HMRC without first establishing the full technical position. Early answers are difficult to retract, and they shape the rest of the enquiry. If you have received an HMRC VAT letter, speak to a specialist before you reply.

Sector-specific VAT advisory

VAT rules apply differently by sector. These are the areas where we see the most complexity and the most recoverable value.

Property and construction VAT

Property is the single largest source of VAT disputes we see. Getting the position right before exchange is far cheaper than correcting it afterwards.

  • Commercial property VAT on purchases, sales, and leases.
  • Option to tax, including notification requirements and disapplication rules.
  • Land transactions and TOGC treatment.
  • Capital goods scheme adjustments across the ten year period for qualifying property.
  • Construction services, including the domestic reverse charge and the correct rate for new build, conversion, and refurbishment work.

Education and schools

  • Identifying exempt supplies and separating them from taxable trading activity.
  • Academy trust VAT recovery, including the section 33B refund scheme.
  • Partial exemption methods and de minimis calculations.
  • VAT treatment of lettings, catering, trips, and commercial hire.

Healthcare VAT

Healthcare income is not automatically VAT exempt. The treatment depends on the nature and purpose of the supply, who provides it, and in some cases how the service is delivered.

  • Mixed supplies, where a single charge covers exempt and taxable elements, and the work of separating exempt and taxable income correctly.
  • The VAT treatment of medical reports, expert witness work, occupational health services, consultancy, room hire, and management services, all of which fall outside the medical care exemption more often than practices expect.
  • Partial exemption and restrictions on input VAT recovery where expenditure supports both exempt and taxable activity, for example dispensing GP practices or pharmacies recovering VAT on costs that serve both NHS and private work.

Cosmetic treatments: a growing source of VAT risk

Cosmetic procedures do not qualify for the medical care exemption in the way many providers assume. Exemption depends on genuine diagnosis and treatment of a health condition, not on who performs the procedure or how it is marketed. HMRC has been increasingly willing to challenge this in recent tribunal cases.

In one recent case, a private clinic offering Botox, dermal fillers, and thread lifting, administered by a GMC-registered doctor, argued the treatments qualified as medical care because of who provided them. The tribunal disagreed: with little evidence of diagnosis at the initial consultation stage, the clinic was found to have failed to register for VAT correctly, and was charged £1.6 million covering VAT dating back over a decade. Weight loss injections and vitamin drips sit in similarly uncertain territory. A separate tribunal case found some vitamin drip treatments could qualify for exemption, but the outcome turned on the medical record-keeping behind each case rather than the treatment itself.

Getting this wrong is expensive: HMRC can enforce retrospective VAT registration going back up to 20 years, with VAT, penalties, and interest all following.

Read our full analysis of VAT classification for cosmetic treatments

This is also a trend worth watching in dental practices specifically, where a shift toward cosmetic work such as whitening and straightening, and away from traditional NHS-related treatment, is changing the VAT profile of a growing number of practices.

Charity and Not-For-Profit VAT

  • Business and non-business apportionment.
  • Zero rating and reliefs on advertising, construction, and qualifying goods.
  • VAT treatment of grants, donations, and sponsorship income.

International & eCommerce VAT

  • Cross-border VAT and place of supply rules for goods and services.
  • One Stop Shop (OSS) and Import One Stop Shop (IOSS) registrations for sales into the EU.
  • Import VAT, postponed VAT accounting, and duty deferment.
  • EU trade, including local registration obligations and fiscal representation.
  • Marketplace and platform VAT obligations for online sellers.

VAT health check

A VAT health check is a high-level review of your income and expenditure, giving us a clear picture of how VAT is currently being treated across your business. It stops short of a full VAT review and is not detailed advisory work; it is a diagnostic first step.

The review covers:

  • VAT liability on your main income streams: standard-rated, exempt, zero-rated, or outside the scope.
  • Input tax recovery on key expenditure categories, including any restrictions.
  • Early indicators of more complex areas, such as partial exemption, business and non-business apportionment, or international supplies.
  • Any apparent errors or inconsistencies that need a closer look.

At the end of the review, you will receive a short summary which includes the key risks identified, any immediate recommendations, and a clear steer on whether a full VAT review is worth doing. If it is, we scope and quote that separately.

This works well at onboarding, when VAT treatment has not been reviewed for some time, or when your business has taken on new income streams that have not been checked. It is offered alongside onboarding where it would help, not required as a condition of it. You will be asked to complete a short questionnaire covering your income and expenditure streams, with a VAT specialist on hand to talk it through if needed.

Fees depend on the size and complexity of your business. Get in touch for an estimate.

Why businesses choose Price Bailey for VAT advice

  • Specialist VAT expertise: VAT is a technical discipline, and our team works on it full time rather than as an extension of general tax work.
  • Sector experience: We advise businesses in property and construction, education, healthcare, charities, manufacturing, and eCommerce, where sector specific rules drive the outcome.
  • HMRC dispute support: We manage enquiries, assessments, disclosures, and tribunal cases, and we know how HMRC approaches each.
  • Transaction advisory: We work alongside our Strategic Corporate Finance and Tax teams on acquisitions, disposals, and restructuring, so VAT is dealt with before it becomes a completion issue.
  • Practical commercial guidance: We give you a clear recommendation and the reasoning behind it, not a summary of the legislation.

VAT FAQs

What is a VAT health check and why do I need one?

A VAT health check is a review of how VAT is applied across your business, covering liability, recovery, processes, and historic treatment. Businesses use them to find reclaim opportunities and to identify errors before HMRC does. They are most valuable after a period of growth, a change in activity, or a change in finance personnel.

Can I recover VAT on a commercial property purchase?

It depends on whether the seller has opted to tax, whether the sale qualifies as a transfer of a going concern, and how you intend to use the property. If you will make taxable supplies from the property, VAT is usually recoverable, but you may need to opt to tax yourself. The capital goods scheme may then require adjustments over ten years. Get advice before exchange, because the position is difficult to change afterwards.

How does VAT partial exemption work?

If your business makes both taxable and exempt supplies, you cannot recover all of your input VAT. The standard method apportions residual VAT based on the ratio of taxable to total supplies. Where the standard method gives an unfair result, you can apply to HMRC for a special method. An annual adjustment is required, and de minimis limits may allow full recovery of small amounts of exempt input VAT.

What happens during an HMRC VAT investigation?

HMRC will usually open with an information request or a compliance visit covering records, returns, and systems. It may review specific transactions or test a sample. If HMRC finds errors, it can raise an assessment covering up to four years, or 20 years where it considers the behaviour deliberate. Penalties depend on whether HMRC judges the error careless, deliberate, or concealed, and on whether the disclosure was prompted or unprompted. Take specialist advice before responding.

What are the Making Tax Digital requirements for VAT?

VAT registered businesses must keep digital VAT records, file returns using MTD compatible software, and maintain digital links between systems so data is not manually transferred. Bridging software is permitted where it connects digitally to your records.

Can businesses reclaim VAT on international transactions?

Often, yes, but the mechanism varies. Import VAT can usually be recovered through your UK VAT return, and postponed VAT accounting removes the cash flow cost. VAT incurred in other countries generally cannot be reclaimed on a UK return and needs a refund claim or a local registration in that country. Place of supply rules determine where VAT is due in the first place.

When should a business seek specialist VAT advice?

Before a property transaction, before an acquisition or restructure, before entering a new market or launching a new revenue stream, and as soon as HMRC makes contact. Advice taken before a transaction is far cheaper than correcting the VAT treatment afterwards.

Speak to a VAT adviser

Whether you need a one-off technical opinion, support with an HMRC enquiry, or ongoing VAT compliance, our specialists can help.

  • Speak to a VAT adviser about a specific question or transaction.
  • Request a VAT review to identify reclaim opportunities and compliance risk.
  • Discuss an HMRC VAT enquiry if you have received a letter, assessment, or visit request.

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Contact us today to find out more about how we can help you

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